ICBO 2022 Scheduling

A playlist of the conference's recordings is available on YouTube.

Sunday, September 25, 2022 (breakfast on your own)

Morning

Parallel Sessions 

9:00 am – 12:30 pm FOODON Hackathon Morning Session
9:00 am – 12:30 pm LinkML Workshop/Tutorial
10:15 – 10:30 am Coffee Break
12:30 – 1:30 pm Lunch at Michigan League

Afternoon

Parallel Sessions

1:30 – 5:00 pm FOODON Hackathon Afternoon Session
1:30 – 5:00 pm First Workshop on the Role of Ontologies in Biomedical AI (ROBI)
3:00 – 3:15 pm Coffee Break
5:00 – 7:00 pm Campus Tour of University of Michigan

Monday, September 26, 2022

Morning

8:00 – 9:00 am Breakfast at Michigan League

Parallel Sessions

9:00 am – 12:30 pm OBO Tutorial: Using and Reusing Ontologies
9:00 am – 12:30 pm FAIR Ontology Harmonization and TRUST Data Interoperability (FOHTI)
10:15 – 10:30 am Coffee Break
12:30 – 1:30 pm Lunch at Michigan League

Afternoon

Parallel Sessions

1:30 – 5:00 pm Workshop on Ontology Tools and Workflows
1:30 – 5:00 pm Financial and Legal Dimensions of Healthcare
1:30 – 5:00 pm 11th Vaccine and Drug Ontology Studies (VDOS-2022)
3:00 – 3:15 pm Coffee Break

Reception

5:00 – 6:30 pm Welcome Reception at Michigan League   
Michigan Room, 2nd floor, across Kalamazoo

6:30 – 7:30 pm Keynote
Chris Stoeckert
Striving for semantic harmony across datasets, communities, and real-world data (slides)

Note: The 6th International Cells in Experimental Life Science Workshop, CELLS 2022, 
will be held virtually on September 21, 2022. See website for details.

Tuesday, September 27, 2022

Morning Session

8:00 – 9:00 am Breakfast at Michigan League

9:00 – 9:15 am Oliver He

Welcome to ICBO 2022! (slides) 

9:15 – 9:45 am JBMS Journal Track Talk 1 - Lauren E. Chan (30 minutes)

The Environmental Conditions, Treatments, and Exposures Ontology (ECTO): Connecting Toxicology and Exposure to Human Health and Beyond (slides) 

9:45 – 10:15 am JBMS Journal Track Talk 2 - Yongqun "Oliver" He (30 minutes)

A Comprehensive Update on CIDO: The Community-based Coronavirus Infectious Disease Ontology (slides)

10:15 – 10:30 am Coffee Break

10:30 – 10:55 am  C. Maria Keet (25 minutes)

Exploring the Ontology of Pandemic (recording) 

10:55 – 11:20 am John Beverley (25 minutes)

Coordinating Coronavirus Research: The Virus Infectious Disease Ontology (slides) 

11:20 – 11:45 pm Sabrina Toro (25 minutes)

Classifying Animal Breeds with the Vertebrate Breed Ontology (slides) 

11:45 – 12:10 pm Fumiaki Toyoshima (25 minutes)

An Ontological Approach to Developing a Unified and Interdisciplinary Framework for Aging (slides) 

12:10 – 12:30 pm Anuwat Pengput (20 minutes)

Ontology representation for Cholangiocarcinoma (slides)

12:30 – 1:30 pm Lunch at Michigan League

Afternoon Session

1:30 – 1:50 pm Melissa Resnick (20 minutes)

The Gaps in the Terminological Representation of the ACORN Social Determinants of Health Survey (recording) 

1:50 – 2:10 pm William Hogan (20 minutes)

Using Ontologies to Enhance Data on Intimate Partner Violence (slides) 

2:10 – 2:30 pm Paul Fabry (20 minutes)

An ontology for healthcare systems (slides) 

2:30 – 3:00 pm Jobst Landgrebe, and Barry Smith (30 minutes)

Perspectives on machine learning (slides)

3:00 – 3:15 pm Coffee Break

3:15 – 4:00 pm Invited Talk: Robert Hoerndorf (45 minutes)

The coevolution of ontologies and knowledge-based analytics in bioinformatics (slides) 

4:00 – 4:15 pm BFO/ISO Celebration (15 minutes)

4:15 – 4:45 pm Flash talks for posters/software demos (2 minutes each)

4:45 – 6:30 pm Poster Session

6:30 – 9:00 pm Grill Party & Dinner at Island Park Shelter B    

Address: Island Park, 1420 Island Drive, Ann Arbor MI 48105   
Note: This is ~ 1 mile walking distance from Michigan League (meeting venue)

Island Park map

Wednesday, September 28, 2022

Morning Session

8:00 – 9:00 am Breakfast at Michigan League

9:00 – 9:15 am Xiaolin Yang (15 minutes)

Introduction of CCBOT 2022: Chinese Conference on Biomedical Ontology and Terminology

9:15 – 10:15 am Keynote
Susan Gregurick
The Importance of Ontologies to Connect Data, Enhance Software, and Create a Data and Digital Health Ecosystem (slides)

10:15 – 10:30 am Coffee Break

10:30 – 10:55 am James Balhoff (25 minutes)

Ubergraph: integrating OBO ontologies into a unified semantic graph (slides) 

10:55 – 11:20 am  Alexander Bartnik (25 minutes)

Development of an Image Data Set Class: Its Role in Biomedical Imaging and Neuroimaging Research (slides) 

11:20 – 11:45 pm Pratik Devkota (25 minutes)

Knowledge of the Ancestors: Intelligent Ontology-aware Annotation of Biological Literature using Semantic Similarity (slides) 

11:45 – 12:10 pm Zach Landis-Lewis (25 minutes)

Performance Summary Display Ontology: Feedback intervention content, delivery, and interpreted information (slides) 

12:10 – 12:30 pm Anna Maria Masci (20 minutes)

Environmental Health Language Collaborative (EHLC): a route to environmental health science data harmonization (slides)

12:30 – 1:30 pm Lunch at Michigan League

Afternoon Session

1:30 – 2:00 pm JBMS Journal Track Talk 3 - Warren Manuel (30 minutes)

Identification of missing hierarchical relations in the vaccine ontology using acquired term pairs (slides) 

2:00 – 2:20 pm Long Tran (20 minutes)

OMOP-2-OPMI: Ontologization of OMOP CDM using OPMI to support clinical data interoperability and analysi (slides) 

2:20 – 2:40 pm Matthew Diller (20 minutes)

An Ontological Representation of Money with a View Toward Economic Determinants of Health (slides)

2:40 – 2:50 pm Coffee Break

2:50 – 4:50 pm OBO Foundry Town Hall (Governance and Operations Committees)

OBO Community Town Hall Slides
OBO Community Town Hall Agenda
OBO Community Town Hall Recording

4:50 – 5:00 pm Closing Remarks

5:00 – 7:00 pm Hiking

Poster Abstracts